Scientific Editor’s Rhodopsin

Recent update from: 24.04.2005


RHO,
Notes

  • C110A/C187A resemble wild type in ground state folds correctly, binds 11 cis RAl
  • MII decays more than 20 times faster than wild type
  • C110S/C187S prevent chromophore formation
  • A/V replacement forms identical structure to Rho
Species:
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (9)


RHO,
Notes

  • Involved in ARRP
Species:
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (35)


RHO,
Notes

  • 216 bp upstream enhancer in mouse and bovine
Species:
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (31)


RHO,
Notes

  • light changes COOH-terminus conformation to be more accessible in Metarhodopsin II
  • phosphorylated by Rhodopsin kinase at Ser and Thr at COOH-terminus
  • Palmitate attached to Cys 321/322
  • Co-translationally acetylated at NH-terminus
  • Glycosylated at Asn 2 and Asn 15
Species:
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (17)


RHO,
Notes

  • Phosphorylated only at C-Terminus
Species:
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (30)


RHO,
Notes

  • Mutation Thr58Arg: no spectral changes, reduced binding of transducin
  • Arg135: no spectral change, no transducin binding
  • del 68 - 71: no chromophor binding
Species:
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (27)


RHO,
Notes

  • 5*107 molecules / rod outer segment
Species:
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (40)


RHO,
Notes

  • Bovine Glu 134 Q/D => enhanced Gt activation mediates light dependend proton uptake by MII
  • MII = at RAl with unprotonated Schiff base
  • 134D = Glu134 but slower proton uptake
  • 134Q lack of proton uptake at pH6 small net release at pH7 normal at pH8
Species:
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (3)


RHO,
Notes

  • Ser338, Ser343 = 1. and 2. phosphorylation site
  • Ser 336 3. major phosphorylation site
  • SAG binding prevents further phosphorylation
  • Reduction of the photolysed chromophore prevents phosphorylation of more than 3 sites
  • Monophosphorylated at 343 or 338
Species:
See also: SAG
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (32)


RHO,
Notes

  • K296E causes no degeneration by continuously activating phototransduction
  • K286E is shut off by phototransduction inactivation mechanism
  • Mutant opsin is phosphorylated and stably bound by SAG
  • Light dependent
Species:
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (25)


RHO,
Notes

  • P9-10 acylation and glycosylation
  • No aberrant glycosylation in rd mice
Species:
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (37)


RHO,
Notes

  • Gly 90, Ala 292, Lys 196 mutations constitutively activated for phosphorylation by RK and activate GNAT
  • Binds tightly to SAG
Species:
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (15)


RHO,
Notes

  • Structural rearrangements: protonation of Glu113, cytoplasmic acidic residues => formation of meta II
  • Equilibrium between partially active (protonated) and inactive (deprotonated) RHO
  • Protonation of one or more carboxyl group is essential
  • Transition from meta I to meta II is accompanied by deprotonation of the Schiff-base
  • GNAt activation is pH dependent at pH 5-6
Species:
See also: GNT
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (6)


RHO,
Notes

  • Non-glycosylated Rho folds correctly
  • Strikingly light dependend Gt activation
  • Asn 2, Gly 3 or Thr 4 had no significant effect on folding, cellular transport or function
  • Asn 15 or Thr 17 activated GNAT poorly
  • Glycosylated by Man3GlcNAc3
Species:
See also: GNAT
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (24)


RHO,
Notes

  • Isomerization of 11cRAl reorganizes the contact surface of helices C and F
Species:
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (13)


RHO,
Notes

Species: Artificial
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (42)


RHO,
Notes

  • Acylation of RHO does not exhibit aging effect
Species: Bos taurus
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (2)


RHO,
Notes

  • 4 mutants of Arg 135 (Lys, Gln, Ala, Leu )
  • All of these mutants can bind and activate GNAT, are phosphorylated and bind SAG with 11cRal
  • They can be phosphorylated and bind SAG without bound 11cRal but do not activate GNAT
  • SAG binding was elevated particularly for R135A
  • GNAT activation was reduced 30 - 45 % for R135 Q,A,L
  • Arg 135 is critical for preventing phosphorylation and SAG binding
  • SAG binds even to unphosphorylated mutations
Species: Bos taurus
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (36)


RHO,
Notes

Species: Bos taurus
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (22)


RHO,
Notes

  • Steps Photo-Batho-BSI-Lumi-rhodopsin involve retinal portion
  • Steps Lumi-Meta I-Meta II-rhodopsin involve protein conformation
  • Binding of atRal to opsin creates pseudo-photoproducts capable of interacting with SAG
  • atRal-opsin-complex is non-covalent
  • atRal recombines with opsin independent of light
Species: Bos taurus
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (21)


RHO,
Notes

  • In plasmamembrane and disk membrane
Species: Bos taurus
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (8)


RHO,
Notes

  • 1000 GNAT can be activated by one activated RHO
  • Cys 322 and 323 are palmitoylated
  • GNAT binding is an active process
  • Ribosylation of CYS347 block GNAT-RHO coupling
Species: Bos taurus
See also: GNT
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (16)


RHO,
Notes

Species: Drosophila melanogaster
See also:
Chromosomal localisation in man:

in mouse:
Gene Data
cDNA:
Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (44)


RHO,
Notes

  • Test of 13 Rh1 mutations (G69D,S95F,W116 X,G119E,P184L,E194K,G195S,W209X,G299E,W313X)
  • Rh1 requires ninaA as chaperon
  • Great majority of rho adRP mutations produce misfolded rho
  • Heterozygotes express 50% of wild type
  • Degeneration of ROS by interference of WT and mutant rho (Drosophila)
  • Pathogenic mechanism independent of activation of visual cascade
  • Mutants accumulate in ER overproliferation
  • Null mutations are recessive and act by gene dosage
Species: Drosophila melanogaster
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (4)


RHO,
Notes

  • Involved in RP4
Species: Homo sapiens
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers: Man
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (11)


RHO,
Notes

  • Chromophor: 11cRAl
  • 93,4% identity to bovine
  • TATA and CAAT-box
Species: Homo sapiens
See also:
Chromosomal localisation in man:

in mouse:
Gene Data
cDNA:
Exons: 5
Primers:
Protein Data
Amino acids: 348 AA
Molecular weight on SDS-PAGE:

calculated: 40000
Reference: (28)


RHO,
Notes

  • Investigation on P23H and G188R causing ADRP, as well as D190A and Y191/192del as artificial mutants
  • Folded RHO is resistant to trypsin digestion, misfolded RHO is degraded into small fragments
Species: Homo sapiens
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (26)


RHO,
Notes

Species: Homo sapiens
See also:
Chromosomal localisation in man:

in mouse:
Gene Data
cDNA: 5,8 kb
Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (5)


RHO,
Notes

  • Mutations in the helices cause RHO misfolding
  • Defects in packing of the helices are relayed to the intradiscal domain
Species: Homo sapiens
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (20)


RHO,
Notes

Species: Homo sapiens
See also:
Chromosomal localisation in man: 3q21-q24

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (39)


RHO,
Notes

  • Leu 125 Phe showed abnormal bleaching behaviour, reduced transducin activation and destabilized metarhodopsin II
Species: Homo sapiens
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (14)


RHO,
Notes

  • Glu 134 and Arg 135 mutations cause altered GDP release from GNAT
  • Constitute the site that provides signal from RHO to GNAT
  • Peripherally associated with GNAT in the GDP-bound state when non-activated
  • Glu 134 and Arg 135 mutations do not affect expression level nor glycosylation pattern
  • Mutants revealed maximum spectral sensitivity at 380 nm => formation of MII
  • E134Q-R135Q, R135G, and R135Q mutant did not activate GTP binding activity of GNAT
Species: Homo sapiens
See also: GNAT
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (1)


RHO,
Notes

  • Maximum absorption at 495 nm
Species: Homo sapiens
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (29)


RHO,
Notes

  • P23H N-terminus is truncated and non-glycosylated
  • Gly 90 Asp: RHO density in vivo is normal
Species: Homo sapiens
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (23)


RHO,
Notes

  • Promoter: Eopsin-Ret/PCE-BAT-1-NRE-Ret4-TATA
  • ca. 3.3 kb promoter size
Species: Homo sapiens
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (43)


RHO,
Notes

Species: Homo sapiens
See also:
Chromosomal localisation in man:

in mouse: 3
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (38)


RHO,
Notes

  • Mouse model for retinopathy
  • Insertion into exon II
  • Heterozygotes had thinned outer nuclear layer
  • Homozygotes lost ERG response at 8 weeks of age
Species: Mus musculus
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (19)


Rho,
Notes

  • Linked to Raf-1
Species: Mus musculus
See also:
Chromosomal localisation in man:

in mouse: 6 distal
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (12)


RHO,
Notes

  • Transgenic mice with deleted phosphorylation sites
  • S334X: rods failed to make outer segment
  • Cone ERG was normal
  • Reduced a-waves on reduced ISI
  • Dim flash strengths prolong only few rod responses, greater flash strengths prolong all
  • Rod mediated a-waves were slightly below normal on sufficient ISI
Species: Mus musculus
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (7)


RHO,
Notes

Species: Octopus spec.
See also:
Chromosomal localisation in man:

in mouse:
Gene Data
cDNA:
Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (33)


RHO,
Notes

  • Dephosphorylation rate is increased by DOPA
  • ROS of DOPA-treated retinas contain increased RHO-phosphatase activity
  • RHO dephosphorylation appears to be affected by Ca2+ and a Ca2+-sensitive phosphatase
  • Phosphorylation rate after DOPA treatment is similar to control
  • After DOPA treatment RHO-P decreased up to 50% at 45 min, with RHO being dephosphorylated at a faster rate
  • DOPA-treated ROS cytosol contained more RHO-phosphatase activity
Species: Rana catesbeiana
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (41)


rho,
Notes

  • Observed first at PN5 coincident with ROS development
Species: Rattus norvegicus
See also:
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (18)


RHO,
Notes

  • 4 synthetic mutations at Gly 90D, Glu 113Q, Ala292E, Lys296G/E/M
  • Mutants constitutively activate RHO for activation of GNT even without light
  • In addition these mutants are constitutively phosphorylated by RHOK for inactivation
  • SAG binds to phosphorylated mutants
  • GNAT and RHOK recognize the same conformational change in RHO
  • After SAG binding RAl cannot reverse these reactions, therefore RHO-SAG complexes accumulate inside photoreceptors
Species: Synthetic
See also: GNT
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (34)


RHO,
Notes

  • rab 6 drives RHO through TGN
  • rab 8 takes RHO post Golgi to membrane
  • C-terminal conserved sequence QVS(A)PA: frog - QVSPA; vertebrates: QVAPA
  • Mutation result in missorting in the TGN
Species: synthetic
See also: RAB
Chromosomal localisation in man:

in mouse:
Gene Data

Exons:
Primers:
Protein Data
Amino acids:
Molecular weight on SDS-PAGE:

calculated:
Reference: (10)



References
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  2. Albert,A.D., Yeagle,P.L., Alderfer,J.L., Dorey,M., Vogt,T., Bhawsar,N., Hargrave,P.A., McDowell,J.H., and Arendt,A. Phosphorylation Alters The Three Dimensional Structure Of The Carboxyl Terminal Of Bovine Rhodopsin. 1997; Invest.Ophthalmol.Vis.Sci. 38: S593-A1000 Goto Top
  3. Arnis,S., Fahmy,K., Hofmann,K.P., and Sakmar,T.P. A conserved carboxylic acid group mediates light-dependent proton uptake and signaling by rhodopsin. 1994; J.Biol.Chem. 269: 23879-23881. Link Goto Top
  4. Baker,E.K., Colley,N.J., and Zuker,C.S. The cyclophilin homolog NinaA functions as a chaperone, forming a stable complex in vivo with its protein target rhodopsin. 1994; EMBO J. 13: 4886-4895. Link Goto Top
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  10. Deretic,D. Post-Golgi trafficking of rhodopsin in retinal photoreceptors. 1998; Eye. 12: 526-530.
    Link Goto Top
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    Link Goto Top
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    Link Goto Top
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    Link Goto Top
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    Link Goto Top
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    Link Goto Top
  22. Jager,S., Szundi,I., Lewis,J.W., Mah,T.L., and Kliger,D.S. Effects of pH on rhodopsin photointermediates from lumirhodopsin to metarhodopsin II. 1998; Biochemistry. 37: 6998-7005.
    Link Goto Top
  23. Jin,J., Heth,C.A., and Roof,D.J. P23H mutant opsin in transgenic murine retina, truncation of N- terminus and lack of glycosylation. 1995; Invest.Ophthalmol.Vis.Sci. 36: S424 Goto Top
  24. Kaushal,S., Ridge,K.D., and Khorana,H.G. Structure and function in rhodopsin: the role of asparagine- linked glycosylation. 1994; Proc.Natl.Acad.Sci.U.S.A. 91: 4024-4028.
    Link Goto Top
  25. Li,T., Franson,W.K., Gordon,J.W., Berson,E.L., and Dryja,T.P. Constitutive activation of phototransduction by K296E opsin is not a cause of photoreceptor degeneration. 1995; Proc.Natl.Acad.Sci.U.S.A. 92: 3551-3555.
    Link Goto Top
  26. Liu,X., Garriga,P., and Khorana,H.G. Structure and function in rhodopsin: correct folding and misfolding in two point mutants in the intradiscal domain of rhodopsin identified in retinitis pigmentosa. 1996; Proc.Natl.Acad.Sci.U.S.A. 93: 4554-4559. Link Goto Top
  27. Min,K.C., Zvyaga,T.A., Cypess,A.M., and Sakmar,T.P. Characterization of mutant rhodopsins responsible for autosomal dominant retinitis pigmentosa. Mutations on the cytoplasmic surface affect transducin activation. 1993; J.Biol.Chem. 268: 9400-9404. Link Goto Top
  28. Nathans,J. and Hogness,D.S. Isolation and nucleotide sequence of the gene encoding human rhodopsin. 1984; Proc.Natl.Acad.Sci.U.S.A. 81: 4851-4855.
    Link Goto Top
  29. Nathans,J., Thomas,D., and Hogness,D.S. Molecular genetics of human color vision: the genes encoding blue, green, and red pigments. 1986; Science. 232: 193-202.
    Link Goto Top
  30. Newton,A.C. and Williams,D.S. Rhodopsin is the major in situ substrate of protein kinase C in rod outer segments of photoreceptors. 1993; J.Biol.Chem. 268: 18181-18186.
    Link Goto Top
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